PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.201710.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 326aa    MW: 35890.5 Da    PI: 6.3393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.201710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30175233259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+g+H h+
  Cucsa.201710.1 175 TDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCGARKQVERSNDDPETFTITYTGDHSHP 233
                     69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-30160235IPR003657WRKY domain
PROSITE profilePS5081132.214169235IPR003657WRKY domain
SuperFamilySSF1182904.45E-26169235IPR003657WRKY domain
SMARTSM007743.0E-36174234IPR003657WRKY domain
PfamPF031063.8E-26176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAAGNDDWDL SAVVRSCNSA GSATDPTSAA AEESALSCLA SLTFDDDPND VAFSFSDIFQ  60
PKQPNGFHEL HQAFISFLPN PSTTATTVTT VPAAEPEIPY LTTPPTNRHF RQVMKPIRPN  120
PHPHPVALHH HHRQPPFSPD LPNSPMTHSL IPKSRKRKNQ QKRRVCHVTA DNLSTDMWAW  180
RKYGQKPIKG SPYPRNYYRC SSSKGCGARK QVERSNDDPE TFTITYTGDH SHPRPTHRNS  240
LAGSSRNRSS SSSSSSRHPT MGDSDPPMMT ASVLLPSSSS PAASPITPLN DYDSTIGEKD  300
GEMFEDMPID SDDEDDDDDI LIPNLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-17163235274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-136LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-136LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145903.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLE5GBD41e-172E5GBD4_CUCME; WRKY transcription factor
STRINGGLYMA10G37460.18e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-45WRKY DNA-binding protein 27